MDAqc sample report

Sample Summary Table

variance label P(bad) P(good) amplicon median mean size lower size upper size Chrom: pass Chrom: gain? Chrom: loss? Chrom: fail
MN1_a.1x 0.009525 good 0.265161 0.734839 10203 16593 2034 51828 [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15... [12] [] [19, 21, 22]
MN1_b.1x 0.008902 good 0.270694 0.729306 10549 16356 2254 48902 [2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 14, 15, 16, 1... [12, 21] [1] [13, 19, 22]
MN2_a.1x 0.011964 good 0.398327 0.601673 9663 16336 1784 52117 [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15... [12] [18, 22] [17, 19, 21]
MN2_b.1x 0.014583 bad 0.533564 0.466436 8186 15376 1297 51772 [1, 3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 1... [12] [2, 18, 22] [19, 21]
MN3_a.1x 0.011952 good 0.363507 0.636493 10523 17585 2010 56022 [1, 3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 1... [2, 12] [] [17, 19, 21, 22]
MN3_b.1x 0.011022 good 0.341994 0.658006 9923 16380 1904 51875 [1, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, ... [2, 12] [3] [21, 22]
MN4_a.1x 0.013428 good 0.498694 0.501306 8598 14168 1662 44029 [1, 2, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 1... [12] [3] [19, 21, 22]
MN4_b.1x 0.013192 good 0.472175 0.527825 9207 15463 1719 48886 [1, 2, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 1... [12] [3, 22] [19, 21]
MN5_a.1x 0.010565 good 0.352815 0.647185 9900 16293 1895 50943 [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15... [12, 19] [] [21, 22]
MN5_b.1x 0.010946 good 0.350013 0.649987 10154 15931 2142 48044 [1, 2, 3, 4, 5, 6, 8, 9, 10, 11, 13, 14, 15, 1... [12, 19] [7] [21, 22]
MN6_a.1x 0.011807 good 0.393585 0.606415 9952 17400 1752 56571 [1, 2, 3, 4, 5, 6, 7, 8, 10, 11, 13, 14, 15, 1... [12] [9] [16, 19, 21, 22]
MN6_b.1x 0.012395 good 0.419037 0.580963 9612 17392 1594 57178 [1, 2, 3, 4, 5, 6, 7, 8, 10, 11, 13, 14, 15, 1... [12] [9, 18, 22] [19, 21]
MN8_a.1x 0.012679 good 0.426954 0.573046 9122 16141 1577 53690 [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 13, 14, 15, 16... [11, 12] [22] [19, 21]
MN8_b.1x 0.011246 good 0.354908 0.645092 9669 16558 1754 53087 [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15... [12] [22] [19, 21]
MN9_a.1x 0.009033 good 0.260515 0.739485 9967 17057 1803 54313 [1, 2, 3, 4, 5, 6, 7, 9, 10, 11, 13, 14, 15, 1... [8, 12, 16] [] [21, 22]
MN9_b.1x 0.010242 good 0.274316 0.725684 9448 17036 1591 55940 [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15... [12, 16] [] [19, 21, 22]
MN9_c.1x 0.011306 good 0.299202 0.700798 10222 17453 1858 56088 [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15... [12, 21] [] [16, 19, 22]
MN9_d.1x 0.009456 good 0.261184 0.738816 9395 16909 1573 56333 [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15... [12, 16] [] [19, 21]
MN9_e.1x 0.010719 good 0.260939 0.739061 9928 17519 1743 57122 [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15... [12] [] [16, 19, 21, 22]

Sample Clustering

Chromosome Outlier Plots

Amplicon size distributions

Sample Periodograms

Sample Autocorrelation